The amygdala is the hub: it learns which things signal danger and drives the response, the hypothalamus and the midbrain’s periaqueductal grey turn it into a racing heart and freezing, the hippocampus adds where it happened, the insula registers the body’s state, and the prefrontal cortex can damp the response down. [1][2][3]
The 3D brain needs JavaScript. The list of parts still says what each one does for fear.
All 6 parts are lit together. Drag to turn, pinch or scroll to zoom, tap a part on the brain or a name in the list to focus it; .
The periaqueductal grey is a region on the midbrain, not a separate shape. The 3D model has no shape for it, so the whole midbrain is lit; the region’s exact border is not drawn.
The ventromedial prefrontal cortex is a region on the prefrontal cortex, not a separate shape. The 3D model has no shape for it, so the whole prefrontal cortex is lit; the region’s exact border is not drawn.
How they work together
A fear stimulus can reach the amygdala by two paths: straight from the thalamus, which is fast, or by way of the cortex, which is slower but processes the details of what was seen or heard. [3]
Worked example: a dog barks behind a fence. The quick thalamus-to-amygdala path starts the startle before you know what it was; the hypothalamus raises heart rate and breathing; the hippocampus recalls that this yard has a dog; and once the cortex sees the fence, the prefrontal cortex helps the response settle. [3][5][1]
Extinction does not simply erase a learned fear: in adults it is read as new learning of a “safe” memory that exists alongside the original one, which is why an extinguished fear can return. [6]
Honest limit: these parts are a network seen working together in imaging and animal studies, much of it in rodents, not a single fear centre; the amygdala is the best-supported hub, but the periaqueductal grey and the ventromedial prefrontal cortex are regions within lit parts, not shapes in this model. [1][2]
Facts describe anatomy and normal function only. A part lit here takes part in fear; it does not do it alone, and it does other jobs too. The 3D model is the adult male BodyParts3D brain (credits and licence); on it the brainstem includes the midbrain, pons and medulla, so lighting the brainstem lights all three.